Chaplin1_DR (DF0003203)
Autonomous hAT DNA transposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Renamed from hAT-3_DR for the very close similarity (85%) to Chaplin1_FR in the fugu genome. The genome harbors only one copy of Chaplin1_DR and several hundred copies of the nonautonomous derivatives Chaplin1A_DR and Chaplin1B_DR.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | Unknown |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2920 positions long. The average length of non-redundant hits to the model is 116.9. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 496 | 2846 | 363 | 1467 |
External Database Links
- Repbase : hAT-3_DR [Requires Repbase registration]