Gypsy50-I_DR (DF0003182)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy50-LTR_DR. 4-bp target site duplications. The internal portion encodes one 1599-aa polyprotein (pos. 608-5404) composed of gag, protease, reverse transcriptase, and integrase domains. Some insertions are fairly recent, considering the high identity between their flanking LTRs. Consensus obtained after the alignment of at least five independent insertions bearing at least 85% homology over at least 1000 bp.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5692 positions long. The average length of non-redundant hits to the model is 868.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 69 1819 17 1175

External Database Links