Gypsy3-I_DR (DF0003175)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon. GYPSY3_DR was active recently, it is flanked by 99% identical GYPSY3LTR_DR. The gag and pol proteins are encoded by ORF1 and ORF2, which are slightly damaged by two false frame shifts.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Unknown

Hit Statistics

The model is 4321 positions long. The average length of non-redundant hits to the model is 2292.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 21 3364 17 2478

External Database Links

  • Repbase : GYPSY3I_DR [Requires Repbase registration]