Gypsy172-I_Dr (DF0003150)

Gypsy LTR retrotransposon from zebrafish: internal sequence

Description

Flanked by Gypsy-172-LTR_DR LTRs. Gypsy-172_DR creates 4-bp target site duplications. Some insertions are fairly recent, considering the high identity between their flanking LTRs. Consensus obtained after the alignment of at least three independent insertions bearing at least 85% homology over at least 1000 bp.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4216 positions long. The average length of non-redundant hits to the model is 690.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 51 5030 42 3585

External Database Links