Non-autonomous Harbinger DNA transposon from zebrafish
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HARBINGER3N_DR is a nonautonomous Harbinger-like DNA transposon, a deletion derivate of HARBINGER3_DR. The consensus sequence was built based on 100 copies that are ~98% identical to each other. This transposon is characterized by the CWG target site duplications and 12-bp terminal inverted repeats. Protein machinery encoded by HARBINGER3_DR was involved in transpositions of HARBINGER3N_DR nonautonomous elements. The genome harbors ~1000 copies of HARBINGER3N_DR that are ~96% identical to the consensus.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1144 positions long. The average length of non-redundant hits to the model is 878.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HARBINGER3N_DR [Requires Repbase registration]