Harbinger3N_DR (DF0003130)

Non-autonomous Harbinger DNA transposon from zebrafish


HARBINGER3N_DR is a nonautonomous Harbinger-like DNA transposon, a deletion derivate of HARBINGER3_DR. The consensus sequence was built based on 100 copies that are ~98% identical to each other. This transposon is characterized by the CWG target site duplications and 12-bp terminal inverted repeats. Protein machinery encoded by HARBINGER3_DR was involved in transpositions of HARBINGER3N_DR nonautonomous elements. The genome harbors ~1000 copies of HARBINGER3N_DR that are ~96% identical to the consensus.


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger

Hit Statistics

The model is 1144 positions long. The average length of non-redundant hits to the model is 878.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 2919 7293 2873 6092

External Database Links