Non-autonomous DNA transposon from zebrafish
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~2000 copies of DNA25TWA2_DR are expected to populate the complete zebrafish genome. They are ~3% divergent from the consensus sequence. This element is characterized by 25-bp terminal inverted repeats and the TWA targets site duplications. Its classification is not certain yet, although it is expected to be a member of the Harbinger/IS5 or Mariner/Tc1 superfamilies.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 802 positions long. The average length of non-redundant hits to the model is 484.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DNA25TWA2_DR [Requires Repbase registration]