Internal sequence of a non-autonomous endogenous retrovirus from zebrafish
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The gag protein encoded by ORF 873-2495 is clearly, but distantly related to gags from Gypsies, ERV1s, Lenti viruses, etc. Pos 1-1467 and 4283-4503 (end) quite similar to ERV1-7_DR-I, so classified as an ERV1 element.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4503 positions long. The average length of non-redundant hits to the model is 1523.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ERV1-N6-I_DR [Requires Repbase registration]