Internal sequence of a non-autonomous endogenous retrovirus from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The gag protein encoded by ORF 301-1758 is distantly related to that of ERV1-N6-I_DR and even more remotely to gags of mammalian ERVK and ERV element. Too little information to classify by.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3793 positions long. The average length of non-redundant hits to the model is 1199.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ERV1-N4-I_DR [Requires Repbase registration]