hAT-2n1_DR (DF0003087)

Non-autonomous hAT DNA transposon from zebrafish

Description

hAT-2n1_DR is a composite nonautonomous hAT transposon derived from hAT-2_DR. Its copies are ~97% identical to the consensus sequence. They are flanked by 8-bp target site duplications. The consensus sequences of these transposons are 97% identical. A portion of hAT-2n1_DR (pos. 323-649) that is not similar to hAT-2_DR is an solo LTR (ERVN1-LTR_DR) insertion.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 1210 positions long. The average length of non-redundant hits to the model is 361.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 733 2703 569 2305

External Database Links

  • Repbase : hAT-2n1_DR [Requires Repbase registration]