Non-autonomous hAT DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
hAT-2n1_DR is a composite nonautonomous hAT transposon derived from hAT-2_DR. Its copies are ~97% identical to the consensus sequence. They are flanked by 8-bp target site duplications. The consensus sequences of these transposons are 97% identical. A portion of hAT-2n1_DR (pos. 323-649) that is not similar to hAT-2_DR is an solo LTR (ERVN1-LTR_DR) insertion.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1210 positions long. The average length of non-redundant hits to the model is 361.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : hAT-2n1_DR [Requires Repbase registration]