Gypsy-23-I_DR (DF0003057)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-23-LTR_DR. 4-bp target site duplications. The internal portion encodes one polyprotein composed of gag, protease, reverse transcriptase, and integrase domains. Likely, based on structure of related elements, including Gypsy7_DR and Gypsy-22_DR, the polyprotein was encoded in active elements by one ORF. This ORF contains a few stop-codons in the consensus sequence (built from four copies less than 4% divergent from each other).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5793 positions long. The average length of non-redundant hits to the model is 754.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 14 2653 12 2145

External Database Links