Non-autonomous DNA transposon from zebrafish
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The consensus sequence was reconstructed based on 7 copies present in sequenced DNA representing 1% of the genome. Approximately 700 copies of DNA9TA1_DR are expected to populate the complete zebrafish genome. The element was active recently, its copies are only 2% divergent from the consensus sequence. Given its length, 9-bp terminal inverted repeats, the TA targets site duplications, DNA9TA1_DR is a quite unusual nonautonomous DNA transposon. DNA9TA1_TR carries also remnants of the HARBINGER2N_DR DNA transposon (positions 2186-2311). The genome harbors also copies of an ancient transposon which is ancestral to DNA9TA1_TR and does not have insertion of HARBINGER2N_DR. The termini match those of EnSpm-4_DR and EnSpm-5_DR. The original entry has been reverse complemented to match.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3333 positions long. The average length of non-redundant hits to the model is 1125.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DNA9TA1_DR [Requires Repbase registration]