REX1-1_DR (DF0003036)

Rex-like non-LTR retrotransposon from zebrafish

Description

The zebrafish genome contains about 1900 copies that are ~9% diverged from the consensus. The element seems to have only encoded a 863-aa pol protein (position 723-3311), containing AP endonuclease (positions 1-200) and reverse transcriptase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Rex-Babar

Hit Statistics

The model is 3590 positions long. The average length of non-redundant hits to the model is 477.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1266 5052 1191 4237

External Database Links

  • Repbase : REX1-1_DR [Requires Repbase registration]