Rex-like non-LTR retrotransposon from zebrafish
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The zebrafish genome contains about 1900 copies that are ~9% diverged from the consensus. The element seems to have only encoded a 863-aa pol protein (position 723-3311), containing AP endonuclease (positions 1-200) and reverse transcriptase domains.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3590 positions long. The average length of non-redundant hits to the model is 477.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : REX1-1_DR [Requires Repbase registration]