Gypsy-20-I_DR (DF0003032)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish - fossilize

Description

Flanked by Gypsy-20-LTR_DR. The genome contains one one copy of Gypsy-20-I_DR that is flanked by 3% diverged LTRs. The internal portion contains two ORFs encoding Gypsy-like gag and pol proteins. The second ORF contains several stop codons. The first ORF encodes a 551-aa gag protein (pos. 170-1822).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6048 positions long. The average length of non-redundant hits to the model is 1683. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 7 1503 4 990

External Database Links