Non-autonomous En/Spm DNA transposon from zebrafish
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2-bp TSD, mostly TA, but other dinucleotides can also be found. 98% identical to consensus. Termini similar to those of Tc1N1_DR, DNA-2-12_DR, and DNA-2-22_DR. Though duplicating TA, these elements have TIRs similar to ENS1_Cis, which seems an autonomous En-Spm1 element (also with TA TSDs)
|Class||Cut and Paste|
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5507 positions long. The average length of non-redundant hits to the model is 810.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Mariner-N3_DR [Requires Repbase registration]