SINE3-1a (DF0002911)

SINE retroelement from zebrafish


SINE3-1a is a consensus sequence of a SINE3-1 subfamily. The SINE3-1a and SINE3-1 consensus sequences are 84% identical to each other.


  1. A novel class of SINE elements derived from 5S rRNA.
    Kapitonov VV, Jurka J;
    Mol Biol Evol 2003;20:694-702. Pubmed


Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily 5S-Deu-L2

Hit Statistics

The model is 570 positions long. The average length of non-redundant hits to the model is 355.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 7771 24775 7383 21563

External Database Links

  • Repbase : SINE3-1a [Requires Repbase registration]