SINE retroelement from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
SINE3-1a is a consensus sequence of a SINE3-1 subfamily. The SINE3-1a and SINE3-1 consensus sequences are 84% identical to each other.
A novel class of SINE elements derived from 5S rRNA.
Kapitonov VV, Jurka J;
Mol Biol Evol 2003;20:694-702. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 570 positions long. The average length of non-redundant hits to the model is 355.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : SINE3-1a [Requires Repbase registration]