DIRS-1-LTR_DR (DF0002892)

Solo-LTR derived from a DIRS retrotransposon from zebrafish

Description

Pos 200-408 is the 5' half of a HE_DR1 SINE (including the tRNA-derived region), containing a hairpin-like GC-rich structure. This is a solo-LTR from DIRS LTR retrotransposon, because it contains a split LTR similar with those of DIRS-4_DR. Other example of solo-LTR derived from DIRS is DIRS-4N2-LTR_DR. It contains at least 3 subfamilies labeled as DIRS-1B-LTR_DR,DIRS-1C-LTR_DR and DIRS-1D-LTR_DR.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Ngaro

Hit Statistics

The model is 622 positions long. The average length of non-redundant hits to the model is 405.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 2130 170974 1945 152538

External Database Links