DIRS-1-LTR_DR (DF0002892)
Solo-LTR derived from a DIRS retrotransposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Pos 200-408 is the 5' half of a HE_DR1 SINE (including the tRNA-derived region), containing a hairpin-like GC-rich structure. This is a solo-LTR from DIRS LTR retrotransposon, because it contains a split LTR similar with those of DIRS-4_DR. Other example of solo-LTR derived from DIRS is DIRS-4N2-LTR_DR. It contains at least 3 subfamilies labeled as DIRS-1B-LTR_DR,DIRS-1C-LTR_DR and DIRS-1D-LTR_DR.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | Ngaro |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 622 positions long. The average length of non-redundant hits to the model is 405.2. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 2130 | 170974 | 1945 | 152538 |
External Database Links
- Repbase : DIRS-1-LTR_DR [Requires Repbase registration]