Gypsy5-I_DR (DF0002888)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

GYPSY5_DR was active recently, as the internal sequence is flanked by identical GYPSY5LTR_DRs. Remnants of the ~300-aa gag and ~1080-aa pol proteins are encoded by one ORF (1358-aa, positions 137-4141).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Unknown

Hit Statistics

The model is 4212 positions long. The average length of non-redundant hits to the model is 752.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 27 3685 22 2557

External Database Links

  • Repbase : GYPSY5I_DR [Requires Repbase registration]