Non-autonomous DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The consensus was built from copies which are 80-90% identical to the consensus sequences. TSD 2 bp (mostly TA dinucleotide). TIR is 11 bp long. The 5' 180 bp is 88% identical to the corresponding region of DNA11TA1_DR, while the final 182 bp match those of EnSpm-10_DR.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 812 positions long. The average length of non-redundant hits to the model is 318.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DNA-TA-1_DR [Requires Repbase registration]