Non-Redundant Coverage, Conservation, and Inserts
Plot showing, for hits above a variety of thresholds, (1) the distribution
of hits along the model, (2) the
position-specific levels of conservation of those hits, and (3)
the position-specific rates of insertion among those hits.
For a selected threshold, the purple line shows, for each model
position, the fraction of all hits that have a match to that position,
considering only RPH-filtered hits (hits for which this model is
deemed to fit the sequence better than any other Dfam model).
Among RPH-filtered hits, the green
line shows, for each position, the average percent identity for a window
of length 7 around the position. The grey line shows the number of
insertions among those hits. In the threshold selection
box, the number in parentheses shows the number of hits meeting
the given threshold.
Fraction of hits covering each position of the model, and
per-position sequence identity and insertion rate based on those hits.