Gypsy-30-I_DR (DF0002844)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-30-LTR_DR. Consensus obtained after the alignment of at least three independent insertions bearing at least 85% homology over at least 1000 bp. The internal portion contains two ORFs encoding a 407-aa gag protein (pos. 204-1424) and a 1363-aa polyprotein (pos. 1388-5476) composed of protease, reverse transcriptase, and integrase domains. Some insertions are fairly recent, considering the high identity between their flanking LTRs.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5597 positions long. The average length of non-redundant hits to the model is 1402.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 28 3664 26 2929

External Database Links