Polinton-1_DR (DF0002823)

Autonomous Maverick/Polinton DNA transposon from zebrafish

Description

This transposon is characterized by ~350-bp terminal inverted repeats and 6-bp target site duplications (some copies have extra 5'-AG and TC-3' at their termini). The consensus sequence was built based on multiple alignment of several copies that are >90% identical to each other. It encodes a family B DNA polymerase (POLB-1_DR), retroviral integrase (INT-1_DR), ATPase (ATP-1_DR), cysteine protease (PRO-1_DR) and additional four unclassified proteins (PX-1_DR, PW-1_DR, PY-1_DR, and PZ-1_DR), conserved in Polintons from different species.

References

  1. Self-synthesizing DNA transposons in eukaryotes.
    Kapitonov VV, Jurka J;
    Proc Natl Acad Sci U S A 2006;103:4540-4545. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Maverick

Hit Statistics

The model is 18485 positions long. The average length of non-redundant hits to the model is 2986.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 56 147 56 147

External Database Links