Internal sequence of an endogenous retrovirus from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
CATCH3I_DR is an internal portion of the CATCH3_DR endogenous retrovirus, which belongs to the BEL/Pao superfamily. It is flanked by 99% identical long terminal repeats, deposited in Repbase as CATCH3LTR_DR. The 3' end of CATCH3LTR_DR and 5' end of CATCH3I_DR are not precisely defined. CATCH3I_DR encodes a 2007-aa polyprotein (positions 209-6229), composed of gag-like, protease, reverse transcriptase, endonuclease domains similar to other retroviruses from the BEL/Pao superfamily.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6373 positions long. The average length of non-redundant hits to the model is 3182.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : CATCH3I_DR [Requires Repbase registration]