CATCH3I_DR (DF0002819)

Internal sequence of an endogenous retrovirus from zebrafish

Description

CATCH3I_DR is an internal portion of the CATCH3_DR endogenous retrovirus, which belongs to the BEL/Pao superfamily. It is flanked by 99% identical long terminal repeats, deposited in Repbase as CATCH3LTR_DR. The 3' end of CATCH3LTR_DR and 5' end of CATCH3I_DR are not precisely defined. CATCH3I_DR encodes a 2007-aa polyprotein (positions 209-6229), composed of gag-like, protease, reverse transcriptase, endonuclease domains similar to other retroviruses from the BEL/Pao superfamily.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Pao

Hit Statistics

The model is 6373 positions long. The average length of non-redundant hits to the model is 3182.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 36 743 36 662

External Database Links

  • Repbase : CATCH3I_DR [Requires Repbase registration]