DNA9NNN1_DR (DF0002802)

Non-autonomous DNA transposon from zebrafish

Description

Several thousand copies of DNA9NNN1_DR are expected to populate the zebrafish genome. They are ~85% divergent from the consensus sequence. This element is characterized by 9-bp terminal inverted repeats and 3-bp target site duplications. Its termini are similar to those of Harbinger-4_DR.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger?

Note: Uncertain classification.

Hit Statistics

The model is 1163 positions long. The average length of non-redundant hits to the model is 547.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 9808 27907 9602 26202

External Database Links

  • Repbase : DNA9NNN1_DR [Requires Repbase registration]