Gypsy-25-I_DR (DF0002789)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish


Flanked by Gypsy-25-LTR_DR. 4-bp target site duplications. The internal portion encodes one polyprotein: the 1503-aa Gypsy-25_DR1p (pos. 64-4572) composed of gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from 3 copies less than 0.5% diverged from the consensus sequence.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4574 positions long. The average length of non-redundant hits to the model is 1220. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 21 2697 15 1727

External Database Links