Gypsy-25-I_DR (DF0002789)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-25-LTR_DR. 4-bp target site duplications. The internal portion encodes one polyprotein: the 1503-aa Gypsy-25_DR1p (pos. 64-4572) composed of gag, protease, reverse transcriptase, and integrase domains. The consensus sequence was built from 3 copies less than 0.5% diverged from the consensus sequence.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4574 positions long. The average length of non-redundant hits to the model is 1220. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 21 2697 15 1727

External Database Links