L1-like non-LTR retrotransposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
L1-Tx1-1_DR forms a separate family of L1-like non-LTR retrotransposons. This element is less than 70% identical to members of other L1-like families identified in the zebrafish genome. L1-Tx1-1_DR belongs to the Tx1 subclade of L1-like elements. L1-Tx-1_DR was active recently (ORF1 and ORF2 proteins are damaged by a few stop codons and indels only).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5220 positions long. The average length of non-redundant hits to the model is 1346. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1-Tx1-1_DR [Requires Repbase registration]