L1-Tx1-1_DR (DF0002732)

L1-like non-LTR retrotransposon from zebrafish


L1-Tx1-1_DR forms a separate family of L1-like non-LTR retrotransposons. This element is less than 70% identical to members of other L1-like families identified in the zebrafish genome. L1-Tx1-1_DR belongs to the Tx1 subclade of L1-like elements. L1-Tx-1_DR was active recently (ORF1 and ORF2 proteins are damaged by a few stop codons and indels only).


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1-Tx1

Hit Statistics

The model is 5220 positions long. The average length of non-redundant hits to the model is 1346. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 24 767 18 468

External Database Links

  • Repbase : L1-Tx1-1_DR [Requires Repbase registration]