Gypsy-166-I_DR (DF0002716)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-166-LTR_DR LTRs. 4-bp target site duplications. The internal portion encodes two proteins: a 311-aa gag protein (pos. 18-950) and an 1132-aa polyprotein (pos. 878-4273, conceptual translation) composed of protease, reverse transcriptase, and integrase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4298 positions long. The average length of non-redundant hits to the model is 1030. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 58 3943 46 2720

External Database Links