Harbinger2N_DR (DF0002714)

Non-autonomous Harbinger DNA transposon from zebrafish


HARBINGER2N_DR copies are flanked by 3-bp target site duplications (usually CWG) generated upon their integration in the genome. It has perfect 13-bp terminal inverted repeats similar to other HARBINGERs. There are approximately 100 copies of HARBINGER2N_DR harbored by the zebrafish genome. The consensus sequence was reconstructed based on 25 copies which are ~0.6% divergent from the consensus sequence. HARBUNGER2N_DR elements were derived from the autonomous HARBINGER2_DR transposon.


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger

Hit Statistics

The model is 1018 positions long. The average length of non-redundant hits to the model is 676.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 31 275 30 248

External Database Links