Gypsy107-I_Dr (DF0002684)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish


Flanked by Gypsy107-LTR_DR. 4-bp target site duplications. The internal portion encodes two proteins: a 312-aa gag (pos. 19-952) and a 1077-aa polyprotein (pos. 886-4116, conceptual translation) composed of protease, reverse transcriptase, and integrase domains. Some insertions are fairly recent, considering the high similarity between their flanking LTRs. Consensus obtained after the alignment of at least five independent insertions bearing at least 85% homology over at least 1000 bp.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4297 positions long. The average length of non-redundant hits to the model is 861.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 37 4628 20 3709

External Database Links