Gypsy-18-I_DR (DF0002644)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish - fossilize

Description

Flanked by Gypsy-18-LTR_DR. The genome contains one copy of Gypsy-18-I_DR that is flanked by identical LTRs. The internal portion contains two ORFs encoding Gypsy-like gag and pol proteins. The first ORF encodes a 612-aa gag protein (pos. 225- 2060). The second ORF encodes a 1578-aa pol protein (pos. 2021-6754) composed of protease, reverse transcriptase, and integrase domains. This retrotransposon can be still active.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6801 positions long. The average length of non-redundant hits to the model is 815.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 11 2057 7 1280

External Database Links