DNA21TA1_DR (DF0002615)

Non-autonomous DNA transposon from zebrafish

Description

The consensus sequence was reconstructed based on 17 copies present in sequenced DNA that represents ~1% of the genome. Approximately 1500 copies of DNA21TA1_DR are expected to populate the complete zebrafish genome. The element was active relatively recently; its copies are 5% divergent from the consensus sequence. This element is characterized by 21-bp terminal inverted repeats and TA targets site duplications.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tc1

Hit Statistics

The model is 539 positions long. The average length of non-redundant hits to the model is 363.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 4335 9136 3922 5669

External Database Links

  • Repbase : DNA21TA1_DR [Requires Repbase registration]