Non-autonomous DNA transposon from zebrafish
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The consensus sequence was reconstructed based on 17 copies present in sequenced DNA that represents ~1% of the genome. Approximately 1500 copies of DNA21TA1_DR are expected to populate the complete zebrafish genome. The element was active relatively recently; its copies are 5% divergent from the consensus sequence. This element is characterized by 21-bp terminal inverted repeats and TA targets site duplications.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 539 positions long. The average length of non-redundant hits to the model is 363.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DNA21TA1_DR [Requires Repbase registration]