HarbingerN3_DR (DF0002574)

Non-autonomous Harbinger DNA transposon from zebrafish


HARBINGERN3_DR is an ancient nonautonomous DNA transposon. Putatively, it belongs to the Harbinger/PIF superfamily. HARBINGERN3_DR copies are flanked by 3-bp target site duplications. The consensus sequence has perfect 21-bp terminal inverted repeats. There are approximately 1000 copies of HARBINGERN3_DR in the zebrafish genome; they are ~91% identical with the consensus sequence. This family is composed of minor subfamilies.


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger

Hit Statistics

The model is 1064 positions long. The average length of non-redundant hits to the model is 411.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 2486 7447 2273 6087

External Database Links