Non-autonomous Harbinger DNA transposon from zebrafish
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HARBINGERN3_DR is an ancient nonautonomous DNA transposon. Putatively, it belongs to the Harbinger/PIF superfamily. HARBINGERN3_DR copies are flanked by 3-bp target site duplications. The consensus sequence has perfect 21-bp terminal inverted repeats. There are approximately 1000 copies of HARBINGERN3_DR in the zebrafish genome; they are ~91% identical with the consensus sequence. This family is composed of minor subfamilies.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1064 positions long. The average length of non-redundant hits to the model is 411.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HARBINGERN3_DR [Requires Repbase registration]