L1-6_DR (DF0002562)

L1-like non-LTR retrotransposon from zebrafish

Description

L1-6_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (no stop codons in ORF2). It encodes two proteins: the 299-aa L1-6_DR1p (positions 154-1050) and the 1255-aa L1-6_DR2p (positions 1710-5474, a conceptual translation). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-6_DR1p is a putative RNA/DNA binding protein, and L1-6_DR2p is composed of the AP endonuclease and reverse transcriptase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 5693 positions long. The average length of non-redundant hits to the model is 690. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 149 1378 126 934

External Database Links

  • Repbase : L1-6_DR [Requires Repbase registration]