L1-like non-LTR retrotransposon from zebrafish
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L1-6_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (no stop codons in ORF2). It encodes two proteins: the 299-aa L1-6_DR1p (positions 154-1050) and the 1255-aa L1-6_DR2p (positions 1710-5474, a conceptual translation). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-6_DR1p is a putative RNA/DNA binding protein, and L1-6_DR2p is composed of the AP endonuclease and reverse transcriptase domains.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5693 positions long. The average length of non-redundant hits to the model is 690. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1-6_DR [Requires Repbase registration]