BHIKHARI_I (DF0002561)

Internal sequence of a Bikhari LTR retrotransposon from zebrafish

Description

ORF at pos 2585-4015. Proteins of the Bhikari group of elements have an ATPase domain (AA 100-200), resembling the conserved domain SMC as found in COG1196, pfam02463, and COG3264.

References

  1. Promoter activity of the zebrafish bhikhari retroelement requires an intact activin signaling pathway.
    Vogel AM, Gerster T;
    Mech Dev 1999;85:133-146. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Hit Statistics

The model is 5277 positions long. The average length of non-redundant hits to the model is 3169.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 48 271 45 257

External Database Links

  • Repbase : BHIKHARI_I [Requires Repbase registration]