Non-autonomous DNA transposon from zebrafish
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8-bp TSDs. Similar to ANGEL, HP_FR1 and TDR19. Several hundred copies in the genome. Present in Barbel (Barbus barbus). Removed 5 bp on either site that were part of 8 bp TSDs. TIRs similar to those of multiple Charlie elements.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 195 positions long. The average length of non-redundant hits to the model is 174.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : TDR3 [Requires Repbase registration]