TDR3 (DF0002560)

Non-autonomous DNA transposon from zebrafish

Description

8-bp TSDs. Similar to ANGEL, HP_FR1 and TDR19. Several hundred copies in the genome. Present in Barbel (Barbus barbus). Removed 5 bp on either site that were part of 8 bp TSDs. TIRs similar to those of multiple Charlie elements.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 195 positions long. The average length of non-redundant hits to the model is 174.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 9700 91937 9134 75755

External Database Links

  • Repbase : TDR3 [Requires Repbase registration]