Gypsy-28-I_DR (DF0002533)

Internal sequence of a Gypsy LTR retrotransposon from zebrafish

Description

Flanked by Gypsy-28-LTR_DR. Gypsy-28_DR is characterized by variable 5-6-bp target site duplications. The internal portion encodes one polyprotein: the 1364-aa Gypsy-28_DR1p (pos. 18-4109) composed of gag, protease, reverse transcriptase, and integrase domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4299 positions long. The average length of non-redundant hits to the model is 2530. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 53 3767 51 2597

External Database Links