hAT-N18_DR (DF0002509)

Non-autonomous hAT DNA transposon from zebrafish

Description

15-bp TIRs and 8-bp TSDs. hAT-N18_DR is a composite transposon: its internal portion (pos. 607-1219) is a copy of the DNA2-2_DR transposon (pos. 1-615). The 70-bp termini of hAT-N18 and hAT-N19 are 90% identical to each other. The primate CHARLIE3 hAT transposon is 78% identical to the hAT-N18 consensus sequence, excluding the DNA2-2_DR copy. Such high identity may suggest horizontal transfer.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 1519 positions long. The average length of non-redundant hits to the model is 283.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1490 21854 1291 14635

External Database Links

  • Repbase : hAT-N18_DR [Requires Repbase registration]