Non-autonomous hAT DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
15-bp TIRs and 8-bp TSDs. hAT-N18_DR is a composite transposon: its internal portion (pos. 607-1219) is a copy of the DNA2-2_DR transposon (pos. 1-615). The 70-bp termini of hAT-N18 and hAT-N19 are 90% identical to each other. The primate CHARLIE3 hAT transposon is 78% identical to the hAT-N18 consensus sequence, excluding the DNA2-2_DR copy. Such high identity may suggest horizontal transfer.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1519 positions long. The average length of non-redundant hits to the model is 283.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : hAT-N18_DR [Requires Repbase registration]