L1-2_DR (DF0002490)

L1-like non-LTR retrotransposon from zebrafish

Description

L1-2_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (ORF1 and ORF2 have two stop codons only). The element is incomplete (its ~100-bp 5' terminus is deleted). It encodes two proteins: 469-aa L1-2_DR1p (positions 1-1407) and 1280-aa L1-2_DR2p (positions 1513-5353). These proteins are most close to corresponding proteins encoded by other L1-like elements. This is the same element as the 5S rDNA-specific non-LTR retrotransposon family MutsuDr1 in the Tx1 clade [1].

References

  1. Cross-genome screening of novel sequence-specific non-LTR retrotransposons: various multicopy RNA genes and microsatellites are selected as targets.
    Kojima KK, Fujiwara H;
    Mol Biol Evol 2004;21:207-217. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1-Tx1

Hit Statistics

The model is 5746 positions long. The average length of non-redundant hits to the model is 313.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 618 7750 384 4225

External Database Links

  • Repbase : L1-2_DR [Requires Repbase registration]