Copia1-I_DR (DF0002489)

LTR retrotransposon from zebrafish: internal sequence

Description

Positions [1465-1977] - Integrase core. 'ACGCT' target site duplication. LTRs are 98% similar to each other.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Copia

Hit Statistics

The model is 4057 positions long. The average length of non-redundant hits to the model is 2102.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 21 148 21 136

External Database Links

  • Repbase : Copia1-I_DR [Requires Repbase registration]