Non-autonomous hAT DNA transposon from zebrafish
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HATN17_DR is a hAT-like non-autonomous DNA transposon from zebrafish. There are around 70 copies of HATN17_DR in the genome, with >96% similarity to the consensus. This transposon contains a partial DANA SINE element, and shows similarity to Dr00017, Dr000745, HE1_DR1, DANA, Dr000132, and TDR9. There is an 8-bp target-site duplication.
no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury) gene.
Schulte-Merker S, van Eeden FJ, Halpern ME, Kimmel CB, Nüsslein-Volhard C;
Development 1994;120:1009-1015. Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1547 positions long. The average length of non-redundant hits to the model is 344.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HATN17_DR [Requires Repbase registration]