HATN17_DR (DF0002450)

Non-autonomous hAT DNA transposon from zebrafish

Description

HATN17_DR is a hAT-like non-autonomous DNA transposon from zebrafish. There are around 70 copies of HATN17_DR in the genome, with >96% similarity to the consensus. This transposon contains a partial DANA SINE element, and shows similarity to Dr00017, Dr000745, HE1_DR1, DANA, Dr000132, and TDR9. There is an 8-bp target-site duplication.

References

  1. no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury) gene.
    Schulte-Merker S, van Eeden FJ, Halpern ME, Kimmel CB, Nüsslein-Volhard C;
    Development 1994;120:1009-1015. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 1547 positions long. The average length of non-redundant hits to the model is 344.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 2098 171694 1740 157450

External Database Links

  • Repbase : HATN17_DR [Requires Repbase registration]