DNA8-4A_DR (DF0002352)

hAT DNA transposon from zebrafish

Description

Original TIRs matched those of both autonomous Tc1 elements (Tc1-7_Xt, Tc1-8_Xt, TC1_FR4) and Charlie elements (hAT-N32_DR, OposCharlie1). Updated sequence has 5 bp trimmed from either end. 8 bp TSDs confirm second classification.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 919 positions long. The average length of non-redundant hits to the model is 358.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 1975 12341 1787 9996

External Database Links

  • Repbase : DNA8-4A_DR [Requires Repbase registration]