Tc1/Mariner-type DNA transposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
>93% identical to consensus. 68-bp TIRs with one mismatch. It specifically inserts into TTAA and appears to generate no TSDs. However the similarity to Mariner/Tc1-type transposase indicates that it makes TA TSDs and ends with CAG..CTG. It is highly similar to DNA-2-3_DR, and probably DNA-2-3_DR is a nonautonomous derivative of this transposon.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2647 positions long. The average length of non-redundant hits to the model is 338.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Mariner-3_DR [Requires Repbase registration]