L1-1_DR (DF0002316)
L1-like non-LTR retrotransposon from zebrafish
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
This element is characterized by 12-bp target site duplications. It could be an active element. It encodes two L1-like proteins: a 294-aa, probably RNA/DNA binding gag protein (positions 172-1053) and a pol protein (positions 1665-5489) composed of AP endonuclease (aa positions 1-200) and reverse transcriptase domains.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LINE | |
| Superfamily | L1 |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5811 positions long. The average length of non-redundant hits to the model is 669.2. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Danio rerio | 233 | 3560 | 173 | 1956 |
External Database Links
- Repbase : L1-1_DR [Requires Repbase registration]