LTR retrotransposon from zebrafish: internal sequence
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Pos. 1-279 and 2199-end (2273) are similar to those of Copia-7-I_DR. Pos 16-306 match the Gypsy-gag-like fragment in Copia-8_DR.
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2273 positions long. The average length of non-redundant hits to the model is 575.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Copia-6-I_DR [Requires Repbase registration]