BHIKHARI-2-I_DR (DF0002275)

Internal sequence of a Bikhari LTR retrotransposon from zebrafish

Description

TSD of this LTR-retrotransposon is 4-bp long. There is an ORF from 2883-4664, which product is labeled Crestin in the nr databases (without predicted function). Bhikhari ORF translation products have an ATPase domain (AA 100-200), resembling the conserved domain SMC as found in COG1196, pfam02463, and COG3264.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Hit Statistics

The model is 5912 positions long. The average length of non-redundant hits to the model is 1522.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 55 348 52 339

External Database Links