Non-autonomous hAT DNA transposon from zebrafish
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~1000 copies of HAT1N_DR are expected to populate the zebrafish genome. HATN1_DR copies are ~90% identical with the consensus sequence. This element is characterized by imperfect 9-bp terminal inverted repeats and the 8-bp target site duplications. The HAT1N_DR family is a nonautonomous derivate of some autonomous element similar to HAT1_DR. The HAT1_DR consensus sequence and HAT1_DR share the ~85% identical ~240-bp and ~140-bp 5' and 3' termini, respectively.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 965 positions long. The average length of non-redundant hits to the model is 669.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HAT1N_DR [Requires Repbase registration]