HAT1N_DR (DF0002260)

Non-autonomous hAT DNA transposon from zebrafish

Description

~1000 copies of HAT1N_DR are expected to populate the zebrafish genome. HATN1_DR copies are ~90% identical with the consensus sequence. This element is characterized by imperfect 9-bp terminal inverted repeats and the 8-bp target site duplications. The HAT1N_DR family is a nonautonomous derivate of some autonomous element similar to HAT1_DR. The HAT1_DR consensus sequence and HAT1_DR share the ~85% identical ~240-bp and ~140-bp 5' and 3' termini, respectively.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 965 positions long. The average length of non-redundant hits to the model is 669.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 638 17926 608 12255

External Database Links

  • Repbase : HAT1N_DR [Requires Repbase registration]