L1-like non-LTR retrotransposon from zebrafish
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L1-9_DR is an ancient family of L1-like non-LTR retrotransposon. There are ~250 copies of L1-9_DR in the zebrafish genome. They are ~7% divergent from the consensus sequence. The consensus sequence is incomplete and represents the 3' end of L1-9_DR. It encodes the C-end of the ORF2 protein (L1-9_DR2p).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1131 positions long. The average length of non-redundant hits to the model is 394.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : L1-9_DR [Requires Repbase registration]