L1-9_DR (DF0002250)

L1-like non-LTR retrotransposon from zebrafish

Description

L1-9_DR is an ancient family of L1-like non-LTR retrotransposon. There are ~250 copies of L1-9_DR in the zebrafish genome. They are ~7% divergent from the consensus sequence. The consensus sequence is incomplete and represents the 3' end of L1-9_DR. It encodes the C-end of the ORF2 protein (L1-9_DR2p).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L1

Hit Statistics

The model is 1131 positions long. The average length of non-redundant hits to the model is 394.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 209 1357 192 921

External Database Links

  • Repbase : L1-9_DR [Requires Repbase registration]