ERV2_DR-I (DF0002213)

Internal sequence of an endogenous retrovirus from zebrafish

Description

ERV2-I_DR is an internal portion of the ERV2_DR endogenous retrovirus. It is flanked by 99% identical ERV2-LTR_DR. ERV2_DR belongs to the class I of endogenous retroviruses (4-bp TSD). It encodes ERV2p, a 455-aa gag-like protein that is closely related to this from ERV1_DR. The C-terminal portion of this protein includes the zinc knuckle motif present in gag proteins of many retroviruses. ERV2-I_DR is 72% identical to ERV1-I_DR.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Unknown

Hit Statistics

The model is 3091 positions long. The average length of non-redundant hits to the model is 1364.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 131 261 109 176

External Database Links

  • Repbase : ERV2-I_DR [Requires Repbase registration]