BELPADRE_LTR (DF0002212)

BEL/Pao-type LTR retrotransposon from zebrafish

Description

A fragment of this element was described in Ref. 1 (Genbank Acc. No. BK005574). This entry reports a full consensus sequence of this relatively young family. The closest relative in Repbase is CATCH1 from Takifugu rubripes.

References

  1. The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements.
    Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ;
    BMC Evol Biol 2005;5:20-20. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Pao

Hit Statistics

The model is 963 positions long. The average length of non-redundant hits to the model is 656.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Danio rerio 35 49 34 48

External Database Links