BEL/Pao-type LTR retrotransposon from zebrafish
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
A fragment of this element was described in Ref. 1 (Genbank Acc. No. BK005574). This entry reports a full consensus sequence of this relatively young family. The closest relative in Repbase is CATCH1 from Takifugu rubripes.
The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements.
Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ;
BMC Evol Biol 2005;5:20-20. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 963 positions long. The average length of non-redundant hits to the model is 656.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : BELPADRE_LTR [Requires Repbase registration]