RMER6C (DF0002191)

Mouse long terminal repeat

Description

Individual copies are ~89% identical to the consensus. 6 bp TSDs.

References

  1. The UCSC Genome Browser Database.
    Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ, ;
    Nucleic Acids Res 2003;31:51-54. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVK Article

Hit Statistics

The model is 690 positions long. The average length of non-redundant hits to the model is 452.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 3729 12751 3568 10333

External Database Links

  • Repbase : RMER6C [Requires Repbase registration]