RMER2 (DF0002179)
Putative LTR of an endogenous retrovirus (a consensus).
Description
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References
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Identification of new medium reiteration frequency repeats in the genomes of Primates, Rodentia and Lagomorpha.
Jurka J, Kapitonov VV, Klonowski P, Walichiewicz J, Smit AF;
Genetica ;98:235-47 Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | ERV1 | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 567 positions long. The average length of non-redundant hits to the model is 353.8. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 2407 | 4362 | 2125 | 2821 |
External Database Links
- Repbase : RMER2 [Requires Repbase registration]